We have a lot of software already installed on the server that covers applications ranging from QC analysis and preprocessing of raw sequence data, transcriptome analysis from RNAseq data, 16S and shotgun metagenomics pipelines, WGS tools, and more. If you have an account on our cluster, then you already have access to all of the software below, so get started!
If you’re looking for a piece of software and don’t find it below, just reach out to Dan Beiting to inquire about getting it installed.
NOTE: When available, I’ve included the appropriate publication/reference for each piece of software. Please cite the authors if you use their software! if a piece of software has not been published, you should cite the github repo or software website